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This workshop covers the basics of the SeqWeb interface. We discuss how to input sequences for analysis, manage the sequences, and get online help. |
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Intro to the GCG SeqWeb interface |
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This workshop covers the basics of searching literature databases. We discuss how to search GenBank and SwissProt sequence annotation as well as the PubMed medical literature. |
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Literature Search Techniques |
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Sequence Comparison Intro and Dot Matrix. Using Dot Matrix methods to look for internal repeats. Adjusting the window size and stringency. Local and Global Alignments. Choosing scoring matrices, gap penalty and gap extension penalty |
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Sequence comparison and demo of GCG SeqWeb BestFit and Gap |
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Multiple Sequence Alignment |
Multiple Sequence Alignment |
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Description of Progressive Pairwise Alignment algorithm and its use by the SeqWeb BestFit program. |
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Phylogenetic Analysis - Intro and use of distance methods to study evolutionary relationships. |
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